A2,3-Sialyltransferase, A2,6-Sialyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name A2,3-Sialyltransferase, A2,6-Sialyltransferase
  Conformer 1
(PDB)
2ex0 (B)
  Conformer 2
(PDB)
2ihz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 230 0.79   27 - 248   332 - 335   393 - 396
2 145 2.56   249 - 331   336 - 392   397 - 410

Sequence


           ________________________________________________________________________________________________________________________ 
 2ex0(B) : MKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSM 
         :                                                                                                                          
 2ihz(A) : MKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSM 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________248________________ 
 2ex0(B) : EYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
         :                                                                                                                          
 2ihz(A) : EYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
           _____________________________________________________________________________________________________248________________ 

           ________________________________________________________________331_335_________________________________________________ 
 2ex0(B) : TGTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDAL 
         :                                                                                                                          
 2ihz(A) : TGTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTS---------aL 
           ________________________________________________________________331_335_________________________________________________ 

           _____392______________________                                                                                           
 2ex0(B) : NNPYVKVMRRLGIIDESQVIFWDSLKQLGG                                                                                           
         :                                                                                                                          
 2ihz(A) : NNPYVKVMRRLGIIDESQVIFWDSLKQL**                                                                                           
           _____392______________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.6
Translation
(A)
0.2
Closure
(%)
96.3
Bending Residues
( green )
  248 - 249
  331 - 332
  335 - 336
  392 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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