Aspartokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartokinase
  Conformer 1
(PDB)
3tvi (B)
  Conformer 2
(PDB)
3tvi (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 259 0.65   5 - 212   225 - 236   247 - 247   249 - 280   282 - 282   378 - 385   415 - 415
2 149 0.86   213 - 224   237 - 246   248 - 248   281 - 281   283 - 377   386 - 404   416 - 435

Sequence


           ________________________________________________________________________________________________________________________ 
 3tvi(B) : LKIVVTKFGGSSLADSNQFKKVKGIIDSDANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDdIAYYLEKVKKNIENGASSDYAASRGEYLNGV 
         :                                                                                                                          
 3tvi(A) : **IVVTKFGGSSLADSNQFKKVKGIIDSDANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDdIAYYLEKVKKNIENGASSDYAASRGEYLNGV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________212________224_________236______ 
 3tvi(B) : ILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLaDPRIVENPKTISKISYKELRELSYgAT 
         :                                                                                                                          
 3tvi(A) : ILAKYLNAEFIDAAEVIFFDK--cFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLaDPRIVENPKTISKISYKELRELSY--- 
           ________________________________________________________________________________________212________224_________236______ 

           __________________________________280___________________________________________________________________________________ 
 3tvi(B) : VLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEyGVSFEHpSGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPD 
         :                                                                                                                          
 3tvi(A) : -lHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEyGVSFEHpSGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPD 
           __________________________________280___________________________________________________________________________________ 

           ________377___384_________________404_________________________________                                                   
 3tvi(B) : SIEIHPNaLVATVGTGaKTKGIANKIFTALSKENVNIRiDQGSSEINVIVGVETVDFEKAVKSIYNAFNE                                                   
         :                                                                                                                          
 3tvi(A) : SIEIHPNaLVATVGTGaKTKGIANKIFTALSKENVNIRiDQGSSEINVIVGVETVDFEKAVKSIYNAFN*                                                   
           ________377___384_________________404_________________________________                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.5
Translation
(A)
-0.2
Closure
(%)
61.3
Bending Residues
( green )
  212 - 213
  224 - 225
  236 - 251
  280 - 285
  377 - 378
  384 - 386
  404 - 416
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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