Aspartate Carbamoyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Carbamoyltransferase
  Conformer 1
(PDB)
1gq3 (A)
  Conformer 2
(PDB)
1gq3 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 147 2.25   12 - 13   142 - 286
2 142 1.04   4 - 11   14 - 141   287 - 305

Sequence


           _________11_____________________________________________________________________________________________________________ 
 1gq3(A) : ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDS--------gETLADTISVISTYVDAIVMAHPQEGAARLATEFSG 
         :                                                                                                                          
 1gq3(C) : *NPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMAHPQEGAARLATEFSG 
           _________11_____________________________________________________________________________________________________________ 

           __________________141___________________________________________________________________________________________________ 
 1gq3(A) : NVPVLNAG-----hPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
         :                                                                                                                          
 1gq3(C) : NVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
           __________________141___________________________________________________________________________________________________ 

           ___________________________________________286_______________________                                                    
 1gq3(A) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRD**                                                    
         :                                                                                                                          
 1gq3(C) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLV                                                    
           ___________________________________________286_______________________                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.3
Translation
(A)
0.4
Closure
(%)
97.1
Bending Residues
( green )
  11 - 16
  141 - 142
  286 - 287
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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