Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (A)
  Conformer 2
(PDB)
3hte (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 205 1.03   66 - 318
2 92 0.27   319 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(A) : ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
         :                                                                                                                          
 3hte(D) : *LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA-yVGEDVENIIQKLLQKCDYDVQKAQRGIVY 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________318_______________ 
 3hws(A) : IDQIDKISRKSDNPrDVSGEGVQQALLKLIEGTfLQVDTSKILFICGGAFAGLDKVISHRVETGSdKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
         :                                                                                                                          
 3hte(D) : IDQIDKISRKS------sGEGVQQALLKLIEGT----dTSKILFICGGAFAGLDKVISHRVE------sEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 
           ______________________________________________________________________________________________________318_______________ 

           ________________________________________________________________________________                                         
 3hws(A) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY                                         
         :                                                                                                                          
 3hte(D) : TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM-dVEKVVIDESVIDGQSKPLLIY                                         
           ________________________________________________________________________________                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.9
Translation
(A)
-1.3
Closure
(%)
46.2
Bending Residues
( green )
  318 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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