Betaine Abc Transporter Permease And Substrate Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Betaine Abc Transporter Permease And Substrate Binding Protein
  Conformer 1
(PDB)
3l6g (A)
  Conformer 2
(PDB)
3l6h (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 145 0.51   322 - 402   508 - 571
2 105 0.36   403 - 507

Sequence


           ________________________________________________________________________________402_____________________________________ 
 3l6g(A) : DKKVDLVYMNWDSEVASINVLTQAMKEHGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQANKTITGIEPGAGVM 
         :                                                                                                                          
 3l6h(A) : DKKVDLVYMNWDSEVASINVLTQAMKEHGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQANKTITGIEPGAGVM 
           ________________________________________________________________________________402_____________________________________ 

           _______________________________________________________________505______________________________________________________ 
 3l6g(A) : AASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDIQNGKTPEEAAKN 
         :                                                                                                                          
 3l6h(A) : AASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDIQNGKTPEEAAKN 
           _______________________________________________________________505______________________________________________________ 

           ________________                                                                                                         
 3l6g(A) : WIKDHQKEVDKWFKGS                                                                                                         
         :                                                                                                                          
 3l6h(A) : WIKDHQKEVDKWFK**                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.0
Translation
(A)
-0.2
Closure
(%)
99.1
Bending Residues
( green )
  402 - 405
  505 - 510
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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