Brain Derived Neurotrophic Factor Receptor Trkb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Brain Derived Neurotrophic Factor Receptor Trkb
  Conformer 1
(PDB)
1wwb (X)
  Conformer 2
(PDB)
1bwn (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 23 8.41   312 - 334
2 22 5.75   290 - 311

Sequence


           ________________________________________________________________________________________________________________________ 
 1wwb(X) : *****************************************************************************************************VHFAPTITFLESPTSDHHW 
         :                                                                                                                          
 1bwn(B) : AAVILESIFLKRSQQKKKTSPLNFKKRLFLLTVHKLSYYKYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIeMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLK 
           ________________________________________________________________________________________________________________________ 

           _______311__________________________________________________________________________                                     
 1wwb(X) : CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID                                     
         :                                                                                                                          
 1bwn(B) : NVIRYNSDLVQKYHPCFWIDGQYLCCSQTAKNAMGCQILEN*******************************************                                     
           _______139__________________________________________________________________________                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
122.7
Translation
(A)
-3.1
Closure
(%)
1.1
Bending Residues
( green )
  311 - 312
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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