Calcium-Gated Potassium Channel Mthk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium-Gated Potassium Channel Mthk
  Conformer 1
(PDB)
2fy8 (H)
  Conformer 2
(PDB)
2aem (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 21 0.52   230 - 250
2 113 0.51   117 - 229
3 74 0.65   261 - 334

Sequence


           __________________________________________________________________________________________________________________229___ 
 2fy8(H) : **SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPF 
         :                                                                                                                          
 2aem(A) : AKSRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPF 
           __________________________________________________________________________________________________________________229___ 

           _____________248__________________________________________________________________________________________               
 2fy8(H) : VISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA**               
         :                                                                                                                          
 2aem(A) : VISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALV               
           _____________248__________________________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.9
Translation
(A)
-0.3
Closure
(%)
77.0
Bending Residues
( green )
  229 - 230
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
11.9
Translation
(A)
-3.6
Closure
(%)
94.7
Bending Residues
( green )
  248 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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