Camp-Dependent Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase
  Conformer 1
(PDB)
1cdk (A)
  Conformer 2
(PDB)
1ctp (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 227 1.17   10 - 29   96 - 105   122 - 318
2 101 1.36   30 - 95   106 - 121   328 - 348

Sequence


           _____________________29________________________________________________________________95_______105_____________121_____ 
 1cdk(A) : *KGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGG 
         :                                                                                                                          
 1ctp(E) : KKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGG 
           _____________________29________________________________________________________________95_______105_____________121_____ 

           ________________________________________________________________________________________________________________________ 
 1cdk(A) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
         :                                                                                                                          
 1ctp(E) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________315___________________________________                 
 1cdk(A) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF                 
         :                                                                                                                          
 1ctp(E) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKf---------DDYEEEEIRVS--eKCGKEFSEF                 
           __________________________________________________________________315___________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.9
Translation
(A)
0.9
Closure
(%)
91.6
Bending Residues
( green )
  29 - 30
  95 - 96
  105 - 106
  121 - 122
  315 - 335
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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