Camp-Dependent Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase
  Conformer 1
(PDB)
1bkx (A)
  Conformer 2
(PDB)
1ctp (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 248 1.35   14 - 35   53 - 53   55 - 55   71 - 75   85 - 85   87 - 87   90 - 105   107 - 111   122 - 318
2 75 1.47   36 - 52   54 - 54   56 - 70   76 - 84   86 - 86   88 - 89   106 - 106   112 - 121   328 - 348

Sequence


           _________________________33_________________52________________70___75_______84__________________105___111_______121_____ 
 1bkx(A) : *****QESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG 
         :                                                                                                                          
 1ctp(E) : KKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGG 
           _________________________33_________________52________________70___75_______84__________________105___111_______121_____ 

           ________________________________________________________________________________________________________________________ 
 1bkx(A) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-lCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
         :                                                                                                                          
 1ctp(E) : EMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________316_________________________________                  
 1bkx(A) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRViNEKCGKEFTEF                  
         :                                                                                                                          
 1ctp(E) : YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKf---------DDYEEEEIRV-SeKCGKEFSEF                  
           ___________________________________________________________________316_________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.8
Translation
(A)
0.8
Closure
(%)
85.8
Bending Residues
( green )
  33 - 36
  52 - 56
  70 - 71
  75 - 76
  84 - 92
  105 - 107
  111 - 112
  121 - 122
  316 - 330
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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