Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit
  Conformer 1
(PDB)
1j3h (A)
  Conformer 2
(PDB)
1cdk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 225 0.67   13 - 33   93 - 93   95 - 105   123 - 316
2 87 0.94   34 - 92   94 - 94   106 - 122   339 - 348

Sequence


           _______________________32__________________________________________________________92__________105______________122_____ 
 1j3h(A) : *GSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGE 
         :                                                                                                                          
 1cdk(A) : KGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGE 
           _______________________32__________________________________________________________92__________105______________122_____ 

           ________________________________________________________________________________________________________________________ 
 1j3h(A) : MFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWl--gTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 
         :                                                                                                                          
 1cdk(A) : MFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________316__________________________________                  
 1j3h(A) : EKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKF----------dYEEEEIRV-iNEKCGKEFTEF                  
         :                                                                                                                          
 1cdk(A) : EKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF                  
           __________________________________________________________________316__________________________________                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.1
Translation
(A)
0.8
Closure
(%)
96.2
Bending Residues
( green )
  32 - 34
  92 - 97
  105 - 106
  122 - 126
  316 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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