Creatine Kinase B-Type

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Creatine Kinase B-Type
  Conformer 1
(PDB)
3dre (B)
  Conformer 2
(PDB)
3b6r (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 238 1.73   10 - 106   132 - 220   225 - 238   253 - 290
2 121 0.76   107 - 131   221 - 224   239 - 252   291 - 377

Sequence


           ___________________________________________________________________________________________________106__________________ 
 3dre(B) : NSHNALKLRFPAEDEFPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPN 
         :                                                                                                                          
 3b6r(B) : *SHNALKLRFPAEDEFPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPN 
           ___________________________________________________________________________________________________106__________________ 

           ____131______________________________________________________________________________________220_______________238______ 
 3dre(B) : YVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGG 
         :                                                                                                                          
 3b6r(B) : YVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGG 
           ____131______________________________________________________________________________________220_______________238______ 

           _____252___________________________________290__________________________________________________________________________ 
 3dre(B) : NMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKR---------vGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEME 
         :                                                                                                                          
 3b6r(B) : NMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEME 
           _____252___________________________________290__________________________________________________________________________ 

           _________________                                                                                                        
 3dre(B) : QRLEQGQAIDDLMPAQK                                                                                                        
         :                                                                                                                          
 3b6r(B) : QRLEQGQAIDDLMPAQK                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.8
Translation
(A)
0.1
Closure
(%)
98.1
Bending Residues
( green )
  106 - 107
  131 - 132
  220 - 225
  238 - 239
  252 - 253
  290 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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