Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1
  Conformer 1
(PDB) 		1kp9 (A)
  Conformer 2
(PDB) 		1l1e (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 240 1.91   22 - 180   203 - 283
2 22 2.48   181 - 202

Sequence


           ________________________________________________________________________________________________________________________ 
 1kp9(A) : **LSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVS 
         :                                                                                                                          
 1l1e(A) : YDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWEKFDEPVDRIVS 
           ________________________________________________________________________________________________________________________ 

           _______________________________169_____________________________201______________________________________________________ 
 1kp9(A) : IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQS 
         :                                                                                                                          
 1l1e(A) : IGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGLTLTHELVHFTKFILAEIFPGGWLPSIPTVHEYAEKVGFRVTAVQSLQLHYARTLDMWATALEANKDQAIAIQS 
           _______________________________169_____________________________201______________________________________________________ 

           ________________________________                                                                                         
 1kp9(A) : EEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK                                                                                         
         :                                                                                                                          
 1l1e(A) : QTVYDRYMKYLTGCAKLFRQGYTDVDQFTLEK                                                                                         
           ________________________________                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		79.7
Translation
(A) 		7.2
Closure
(%) 		67.9
Bending Residues
( green ) 		  169 - 183
  201 - 207
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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