Dbh Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dbh Protein
  Conformer 1
(PDB)
1k1q (A)
  Conformer 2
(PDB)
1k1q (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 126 0.52   3 - 19   77 - 175   233 - 242
2 57 0.57   176 - 232
3 100 0.56   243 - 342

Sequence


           ________________________________________________________________________________________________________________________ 
 1k1q(A) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYS--------aNYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
         :                                                                                                                          
 1k1q(B) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYSGtSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________175______________________________________________________232_______242_ 
 1k1q(A) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
         :                                                                                                                          
 1k1q(B) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
           _________________________________________________175______________________________________________________232_______242_ 

           _____________________________________________________________________________________________________                    
 1k1q(A) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
         :                                                                                                                          
 1k1q(B) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
           _____________________________________________________________________________________________________                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
-0.1
Closure
(%)
77.1
Bending Residues
( green )
  175 - 176
  232 - 233
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
9.8
Translation
(A)
0.1
Closure
(%)
27.5
Bending Residues
( green )
  242 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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