3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nrx (A)
  Conformer 2
(PDB)
1dqs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 195 0.73   141 - 147   184 - 248   251 - 254   256 - 389
2 173 0.7   7 - 140   148 - 183   249 - 250   255 - 255

Sequence


           ________________________________________________________________________________________________________________________ 
 1nrx(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
         :                                                                                                                          
 1dqs(A) : PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGF 
           ________________________________________________________________________________________________________________________ 

           ______________140_144____________________________________183____________________________________________________________ 
 1nrx(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGhRFEGTEEILKARIL 
         :                                                                                                                          
 1dqs(A) : VASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRR------rFEGTEEILKARIL 
           ______________140_144____________________________________183____________________________________________________________ 

           _248___254______________________________________________________________________________________________________________ 
 1nrx(A) : ASARHKAYVVSAD---gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD-----pKKK 
         :                                                                                                                          
 1dqs(A) : ASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKK 
           _248___254______________________________________________________________________________________________________________ 

           ____________________________                                                                                             
 1nrx(A) : IVLLSAIGTPYETRASVVANEDIRVVLA                                                                                             
         :                                                                                                                          
 1dqs(A) : IVLLSAIGTPYETRASVVANEDIRVVL*                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.0
Translation
(A)
-0.1
Closure
(%)
99.7
Bending Residues
( green )
  140 - 141
  144 - 148
  183 - 184
  248 - 251
  254 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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