Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
3qy9 (B)
  Conformer 2
(PDB)
3qy9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.43   2 - 105   215 - 238
2 109 0.56   106 - 214

Sequence


           _____________________________________________________________________________________________________103________________ 
 3qy9(B) : SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAA 
         :                                                                                                                          
 3qy9(D) : SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAA 
           _____________________________________________________________________________________________________103________________ 

           ___________________________________________________________________________________________213__________________________ 
 3qy9(B) : AVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDN 
         :                                                                                                                          
 3qy9(D) : AVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDN 
           ___________________________________________________________________________________________213__________________________ 

           _                                                                                                                        
 3qy9(B) : L                                                                                                                        
         :                                                                                                                          
 3qy9(D) : L                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.1
Translation
(A)
0.4
Closure
(%)
79.2
Bending Residues
( green )
  103 - 107
  213 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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