DNA Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Ligase
  Conformer 1
(PDB)
3sgi (A)
  Conformer 2
(PDB)
1zau (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 249 1.18   78 - 326
2 64 2.24   10 - 73

Sequence


           ______________________________________________________________71________________________________________________________ 
 3sgi(A) : QTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGV 
         :                                                                                                                          
 1zau(A) : QTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGV 
           ______________________________________________________________71________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3sgi(A) : ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 
         :                                                                                                                          
 1zau(A) : ALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3sgi(A) : TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQAT 
         :                                                                                                                          
 1zau(A) : TLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPE*************************************** 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________                                                                         
 3sgi(A) : LHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMP                                                                         
         :                                                                                                                          
 1zau(A) : ************************************************                                                                         
           ________________________________________________                                                                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
171.0
Translation
(A)
-4.5
Closure
(%)
74.4
Bending Residues
( green )
  71 - 81
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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