Elongation Factor G

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor G
  Conformer 1
(PDB)
1ktv (A)
  Conformer 2
(PDB)
2efg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.77   110 - 120   481 - 483   602 - 677
2 352 0.76   9 - 109   121 - 399
3 118 0.7   484 - 601

Sequence


           ___________________________________________________________________________109________120_______________________________ 
 1ktv(A) : VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIa-VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIR 
         :                                                                                                                          
 2efg(A) : **YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIaAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIR 
           ___________________________________________________________________________109________120_______________________________ 

           ________________________________________________________________________________________________________________________ 
 1ktv(A) : TMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL 
         :                                                                                                                          
 2efg(A) : TMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ktv(A) : LLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVG 
         :                                                                                                                          
 2efg(A) : LLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVG 
           ________________________________________________________________________________________________________________________ 

           ____398_________________________________________________________483_____________________________________________________ 
 1ktv(A) : EDAPRVILiDVAIEPKsQALARLAEEDPTFRVSTHPqTIISGMGELHLEIIVDRLKREFvGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPK 
         :                                                                                                                          
 2efg(A) : EDAPRVIL-------------------------------------------------ESvGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPK 
           ____398_________________________________________________________483_____________________________________________________ 

           ______________________________________________________________601_______________________________________________________ 
 1ktv(A) : EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYA 
         :                                                                                                                          
 2efg(A) : EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYA 
           ______________________________________________________________601_______________________________________________________ 

           _________________________________                                                                                        
 1ktv(A) : TDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK                                                                                        
         :                                                                                                                          
 2efg(A) : TDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
-0.3
Closure
(%)
96.0
Bending Residues
( green )
  109 - 110
  120 - 121
  398 - 481
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
12.6
Translation
(A)
0.1
Closure
(%)
98.8
Bending Residues
( green )
  483 - 484
  601 - 602
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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