Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor 1-Alpha
  Conformer 1
(PDB)
1ijf (A)
  Conformer 2
(PDB)
4c0s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 4.07   6 - 56   79 - 235
2 204 1.39   236 - 439

Sequence


           ________________________________________________________________________________________________________________________ 
 1ijf(A) : GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 
         :                                                                                                                          
 4c0s(A) : **EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEM-kGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________233_______ 
 1ijf(A) : EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD-ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 
         :                                                                                                                          
 4c0s(A) : EFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYeKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTI-LPPrPT 
           ______________________________________________________________________________________________________________235_______ 

           ________________________________________________________________________________________________________________________ 
 1ijf(A) : DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLD 
         :                                                                                                                          
 4c0s(A) : DKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVID 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________                            
 1ijf(A) : CHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK************                            
         :                                                                                                                          
 4c0s(A) : CHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKSGGAGKVTKSA                            
           _____________________________________________________________________________________________                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
69.0
Translation
(A)
2.7
Closure
(%)
78.3
Bending Residues
( green )
  233 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

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