Endo-1,4-Beta-Xylanase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-1,4-Beta-Xylanase A
  Conformer 1
(PDB)
2dcy (B)
  Conformer 2
(PDB)
2qz3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 141 0.41   4 - 9   22 - 28   39 - 57   66 - 170   180 - 183
2 39 0.54   10 - 21   29 - 38   58 - 65   171 - 179

Sequence


           _______8__________20______28________38_________________57______65_______________________________________________________ 
 2dcy(B) : ASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
         :                                                                                                                          
 2qz3(B) : *STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
           _______8__________20______28________38_________________57______65_______________________________________________________ 

           _______________________________________________170______179______                                                        
 2dcy(B) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW                                                        
         :                                                                                                                          
 2qz3(B) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATAGYQSSGSSNVTVW                                                        
           _______________________________________________170______179______                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.0
Translation
(A)
-0.1
Closure
(%)
83.5
Bending Residues
( green )
  8 - 10
  20 - 22
  28 - 29
  38 - 39
  57 - 58
  65 - 66
  170 - 171
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download