Excinuclease Abc Subunit A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Excinuclease Abc Subunit A
  Conformer 1
(PDB)
2r6f (A)
  Conformer 2
(PDB)
3pih (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 579 2.4   6 - 276   410 - 411   413 - 687   838 - 932
2 87 3.67   277 - 409   412 - 412
3 147 2.35   688 - 837

Sequence


           ________________________________________________________________________________________________________________________ 
 2r6f(A) : DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQeKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPT 
         :                                                                                                                          
 3pih(A) : NEIVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTY-------kKPDVDEIEGLSPAIAIDQKT-sHNPRSTVGTVTEIYDYLRVLYARIGKAHCPE 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________276__________ 
 2r6f(A) : HGIEIQSQTIEQv--DRLLSYPERTK-qILAPiDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGEL-LFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEV 
         :                                                                                                                          
 3pih(A) : CGRPLEKKSIDEILQDLFNSFKEGSRIYILAPl--VVDRLILETRNEHRILDSLELAMREGKGFVEIRNVDTGESKIFSENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEV 
           ___________________________________________________________________________________________________________278__________ 

           ____________________________________________________________________________________________________________________409_ 
 2r6f(A) : DLDLVIPNDELTLKEHAIAP--WEPyYPQLLEAVCRHYGI-PdVPVKDLPKEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQeKYaEQPCPTCQGY 
         :                                                                                                                          
 3pih(A) : DPSLV-----------aIIPYRWDRRLSRWVAREIEKRGVSPpEDVKEF-------ILYGD----------------------fEGVVPKVQRWHRETeMKEWLEKNFIVQRTCSVCGGR 
           ____________________________________________________________________________________________________________________389_ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : RLKKESLAVLVGGKHIGEVTA-sVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 
         :                                                                                                                          
 3pih(A) : RLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2r6f(A) : S-rDLGNTLIVVEHDEDTl-AADYLIDIGPGAGIHGGEVVAAGTPEEV--nDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNE 
         :                                                                                                                          
 3pih(A) : KLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTRRLPYAS-LKIKGVRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVME 
           ________________________________________________________________________________________________________________________ 

           ___________________________________687__________________________________________________________________________________ 
 2r6f(A) : VLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEh-FLPDVYVPCEVCHGKRYNR 
         :                                                                                                                          
 3pih(A) : TLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNR 
           ___________________________________667__________________________________________________________________________________ 

           ________________________________________________________________836_____________________________________________________ 
 2r6f(A) : ETLEVTYKGKNIAEVLD-tVEDALDFFASIPKIKRKLETLYDVGLGY-kLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 
         :                                                                                                                          
 3pih(A) : ETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 
           ________________________________________________________________816_____________________________________________________ 

           ___________________________________________________________                                                              
 2r6f(A) : VIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARqARYEA                                                              
         :                                                                                                                          
 3pih(A) : VIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLKNVL************                                                              
           ___________________________________________________________                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.3
Translation
(A)
-0.3
Closure
(%)
54.2
Bending Residues
( green )
  276 - 277
  409 - 413
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
27.6
Translation
(A)
3.8
Closure
(%)
99.4
Bending Residues
( green )
  687 - 688
  836 - 838
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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