Exodeoxyribonuclease V, Subunit Recd, Putative

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Exodeoxyribonuclease V, Subunit Recd, Putative
  Conformer 1
(PDB)
3gpl (A)
  Conformer 2
(PDB)
3gp8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 300 1.23   186 - 461   470 - 494   496 - 498   700 - 712
2 202 1.12   462 - 469   495 - 495   499 - 699

Sequence


           ________________________________________________________________________________________________________________________ 
 3gpl(A) : *******************************ALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVE 
         :                                                                                                                          
 3gp8(A) : QGLERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3gpl(A) : LGRLSED------------eGRIYLPHVLRAEKKLASLIRTLLATPPADgNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAAR 
         :                                                                                                                          
 3gp8(A) : LGRLSEDDSPLFAeAAATGEGRIYLPHVLRAEKKLASLIRTLLATPPAD--dDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAAR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________461_____469___________________491________________________ 
 3gpl(A) : RLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAW 
         :                                                                                                                          
 3gp8(A) : RLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAW 
           _______________________________________________________________461_____469___________________491________________________ 

           ________________________________________________________________________________________________________________________ 
 3gpl(A) : GDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELF 
         :                                                                                                                          
 3gp8(A) : GDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKN-----iFNGTLGMVLKAEGARLTVD---nVVELTGAELF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________699_________________                                        
 3gpl(A) : NLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRA**                                        
         :                                                                                                                          
 3gp8(A) : NLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRAHL                                        
           _____________________________________________________________699_________________                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.4
Translation
(A)
0.9
Closure
(%)
40.2
Bending Residues
( green )
  461 - 464
  469 - 470
  491 - 500
  699 - 703
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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