Flagellar Motor Switch Protein Flig

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flagellar Motor Switch Protein Flig
  Conformer 1
(PDB)
3hjl (A)
  Conformer 2
(PDB)
4fhr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 50 0.95   116 - 163   184 - 185
2 20 1.27   164 - 183
3 131 4.85   186 - 323

Sequence


           ________________________________________________________________________________________________________________________ 
 3hjl(A) : KSALSKAQKAAVLLLSLPEEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLL 
         :                                                                                                                          
 4fhr(B) : *************************************************************************************************************HMDPVQLVNFL 
           ________________________________________________________________________________________________________________________ 

           ____________________________________163_________________183_____________________________________________________________ 
 3hjl(A) : KNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDIRK 
         :                                                                                                                          
 4fhr(B) : QSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGF-------vGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILK 
           ____________________________________162_________________182_____________________________________________________________ 

           ____________________________________________________________________________________                                     
 3hjl(A) : LSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMIDEGKIE***                                     
         :                                                                                                                          
 4fhr(B) : LDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEIVIAR                                     
           ____________________________________________________________________________________                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.2
Translation
(A)
-0.1
Closure
(%)
98.5
Bending Residues
( green )
  163 - 164
  183 - 185
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
167.1
Translation
(A)
-26.9
Closure
(%)
81.7
Bending Residues
( green )
  184 - 204
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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