Glucosamine 6-Phosphate Deaminase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine 6-Phosphate Deaminase
  Conformer 1
(PDB)
1dea (A)
  Conformer 2
(PDB)
1cd5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 200 0.63   3 - 137   145 - 146   155 - 202   235 - 245   258 - 261
2 59 0.82   138 - 144   147 - 154   203 - 234   246 - 257

Sequence


           ________________________________________________________________________________________________________________________ 
 1dea(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
         :                                                                                                                          
 1cd5(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
           ________________________________________________________________________________________________________________________ 

           ______________137___143________________________________________________________202_____________________________234______ 
 1dea(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
         :                                                                                                                          
 1cd5(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
           ______________137___143________________________________________________________202_____________________________234______ 

           _244__________257_________                                                                                               
 1dea(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
         :                                                                                                                          
 1cd5(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
           _244__________257_________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
0.1
Closure
(%)
74.8
Bending Residues
( green )
  137 - 138
  143 - 156
  202 - 203
  234 - 235
  244 - 246
  257 - 259
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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