5-Methyltetrahydropteroyltriglutamate--Homocysteine Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5-Methyltetrahydropteroyltriglutamate--Homocysteine Methyltransferase
  Conformer 1
(PDB)
4qqu (A)
  Conformer 2
(PDB)
4l5z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 431 0.59   3 - 401   507 - 510   516 - 536   575 - 578   623 - 634
2 318 1.19   402 - 506   511 - 515   537 - 574   579 - 622   635 - 765

Sequence


           ________________________________________________________________________________________________________________________ 
 4qqu(A) : MVQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPERYTKFDLAPIDVLFAMGRGLQAAATtQAAVDVTALEMVK 
         :                                                                                                                          
 4l5z(A) : MVQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPERYTKFDLAPIDVLFAMGRGLQ--------vDVTALEMVK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4qqu(A) : WFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLGKADKDSLDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDAL 
         :                                                                                                                          
 4l5z(A) : WFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLGKADKDSLDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDAL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4qqu(A) : VGADVPELILTTYFGDVRPNLKAIENLPVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFS 
         :                                                                                                                          
 4l5z(A) : VGADVPELILTTYFGDVRPNLKAIENLPVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFS 
           ________________________________________________________________________________________________________________________ 

           ____________________________________400_________________________________________________________________________________ 
 4qqu(A) : FATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFINKEIE 
         :                                                                                                                          
 4l5z(A) : FATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFINKEIE 
           ____________________________________400_________________________________________________________________________________ 

           ______________________506_510__515_____________531________________________________________574_578_______________________ 
 4qqu(A) : TVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVN 
         :                                                                                                                          
 4l5z(A) : TVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVN 
           ______________________506_510__515_____________531________________________________________574_578_______________________ 

           __________________622_________634_______________________________________________________________________________________ 
 4qqu(A) : DLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDPNHIKALDADVVSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRI 
         :                                                                                                                          
 4l5z(A) : DLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFC---lDPNHIKALDADVVSIEFS--dDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRI 
           __________________622_________634_______________________________________________________________________________________ 

           ______________________________________________                                                                           
 4qqu(A) : EEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAKY                                                                           
         :                                                                                                                          
 4l5z(A) : EEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAKY                                                                           
           ______________________________________________                                                                           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.8
Translation
(A)
0.3
Closure
(%)
91.8
Bending Residues
( green )
  400 - 405
  506 - 508
  510 - 511
  515 - 516
  531 - 537
  574 - 575
  578 - 581
  622 - 623
  634 - 635
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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