Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB) 		2a5t (A)
  Conformer 2
(PDB) 		4nf4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 0.65   6 - 144   246 - 285
2 101 0.8   145 - 245

Sequence


           ________________________________________________________________________________________________________________________ 
 2a5t(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPN------tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVkKEWNGMMGELLSGQADMIVAPLTINNE 
         :                                                                                                                          
 4nf4(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDgSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVkKEWNGMMGELLSGQADMIVAPLTINNE 
           ________________________________________________________________________________________________________________________ 

           ________141_____________________________________________________________________________________________________245_____ 
 2a5t(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
         :                                                                                                                          
 4nf4(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
           ________141_____________________________________________________________________________________________________245_____ 

           _____________________________________                                                                                    
 2a5t(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY                                                                                    
         :                                                                                                                          
 4nf4(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.5
Translation
(A) 		1.5
Closure
(%) 		99.5
Bending Residues
( green ) 		  141 - 146
  245 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download