3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
13pk (A)
  Conformer 2
(PDB)
1php (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 201 2.34   7 - 202   225 - 227   395 - 417
2 186 1.71   203 - 224   228 - 394

Sequence


           ________________________________________________________________________________________________________________________ 
 13pk(A) : *EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AADVVS 
         :                                                                                                                          
 1php(A) : MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKG-------KVV---------EELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVD 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________202______________219______________________ 
 13pk(A) : KMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGG 
         :                                                                                                                          
 1php(A) : RLNEGDVLLLENVRFYPGE----EKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLP-AVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGG 
           ______________________________________________________________________________180______________197______________________ 

           ________________________________________________________________________________________________________________________ 
 13pk(A) : AMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMG 
         :                                                                                                                          
 1php(A) : GLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALA 
           ________________________________________________________________________________________________________________________ 

           ______________________________394_________________________                                                               
 13pk(A) : RGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                                               
         :                                                                                                                          
 1php(A) : EALDTY---SVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK                                                               
           ______________________________369_________________________                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.1
Translation
(A)
-1.7
Closure
(%)
93.0
Bending Residues
( green )
  202 - 203
  219 - 228
  394 - 395
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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