Barnase (G Specific Endonuclease) (E.C.3.1.27.-)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Barnase (G Specific Endonuclease) (E.C.3.1.27.-)
  Conformer 1
(PDB)
1brn (L)
  Conformer 2
(PDB)
1yvs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 0.5   40 - 108
2 35 1.29   5 - 39

Sequence


           _________________________________37_________________________________________________________________________             
 1brn(L) : VINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR             
         :                                                                                                                          
 1yvs(A) : VINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR             
           _________________________________37_________________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
124.2
Translation
(A)
0.5
Closure
(%)
100.0
Bending Residues
( green )
  37 - 44
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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