Alpha-1 Catenin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-1 Catenin
  Conformer 1
(PDB)
1l7c (C)
  Conformer 2
(PDB)
1l7c (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 1.52   396 - 396   428 - 460   496 - 628
2 66 0.92   395 - 395   397 - 427   461 - 495

Sequence


           _____395_____________________________427_____________________________460______________________________494_______________ 
 1l7c(C) : *****SFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVLTDAVDDITSID 
         :                                                                                                                          
 1l7c(A) : DHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVLTDAVDDITSID 
           _____395_____________________________427_____________________________460______________________________494_______________ 

           __________________________________________________________________________________________________________________       
 1l7c(C) : DFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSd-ENEFIDASRLVYDGIRDIRKAVL       
         :                                                                                                                          
 1l7c(A) : DFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSDdENEFIDASRLVYDGIRDIRKAVL       
           __________________________________________________________________________________________________________________       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
0.5
Closure
(%)
59.3
Bending Residues
( green )
  395 - 398
  427 - 428
  460 - 461
  494 - 496
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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