Atp Synthase Gamma Chain, Mitochondrial Precursor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Gamma Chain, Mitochondrial Precursor
  Conformer 1
(PDB)
1w0j (G)
  Conformer 2
(PDB)
2jdi (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 109 0.71   26 - 131   133 - 167   169 - 169   171 - 224   227 - 227   232 - 232
2 70 0.44   3 - 25   132 - 132   168 - 168   170 - 170   225 - 226   228 - 231   233 - 270

Sequence


           _______________________25____________________________________________________________131_______________________167______ 
 1w0j(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGlIIGVSSDRGLCGAIHSSVAKQMKiIGVGDKIRSILtFKEVGRRPPTFGDASVIALELsIIFNRFRSVISYKT 
         :                                                                                                                          
 2jdi(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGlIIGVSSDRGLCGAIHSSVA----iIGVGDKIRSILtFKEVGRRPPTFGDASVIALELsIIFNRFRSVISYKT 
           _______________________25____________________________________________________________131_______________________167______ 

           _____________________224_________________________________________________                                                
 1w0j(G) : lRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL*                                                
         :                                                                                                                          
 2jdi(G) : -----eYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD                                                
           _____________________224_________________________________________________                                                

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.9
Translation
(A)
0.1
Closure
(%)
97.7
Bending Residues
( green )
  25 - 26
  131 - 133
  167 - 171
  224 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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