Bifunctional Purine Biosynthesis Protein Purh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional Purine Biosynthesis Protein Purh
  Conformer 1
(PDB)
2b1i (B)
  Conformer 2
(PDB)
2b1g (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 411 0.91   6 - 254   260 - 285   287 - 289   293 - 394   428 - 433   437 - 448   450 - 453   533 - 538   555 - 555   590 - 591
2 175 0.76   255 - 259   286 - 286   290 - 292   395 - 427   434 - 436   449 - 449   454 - 532   539 - 554   556 - 589

Sequence


           ________________________________________________________________________________________________________________________ 
 2b1i(B) : RQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVE 
         :                                                                                                                          
 2b1g(D) : RQQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSSPGVTVPEAVE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2b1i(B) : KIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCD 
         :                                                                                                                          
 2b1g(D) : KIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQYDAAISDYFRKEYSKGVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCD 
           ________________________________________________________________________________________________________________________ 

           ________254__259_______________________285_289__________________________________________________________________________ 
 2b1i(B) : ALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGY 
         :                                                                                                                          
 2b1g(D) : ALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGY 
           ________254__259_______________________285_289__________________________________________________________________________ 

           ____________________________394______________________________427___433____________448__453______________________________ 
 2b1i(B) : CVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGV 
         :                                                                                                                          
 2b1g(D) : CVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGV 
           ____________________________394______________________________427___433____________448__453______________________________ 

           ______________________________________________532___538_____________554________________________________589____           
 2b1i(B) : KRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH           
         :                                                                                                                          
 2b1g(D) : KRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH           
           ______________________________________________532___538_____________554________________________________589____           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.8
Translation
(A)
1.6
Closure
(%)
9.3
Bending Residues
( green )
  254 - 255
  259 - 260
  285 - 287
  289 - 290
  292 - 293
  394 - 395
  427 - 428
  433 - 434
  436 - 437
  448 - 450
  453 - 454
  532 - 533
  538 - 539
  554 - 556
  589 - 590
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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