Cystathionine Gamma-Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cystathionine Gamma-Lyase
  Conformer 1
(PDB)
2nmp (B)
  Conformer 2
(PDB)
2nmp (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 231 0.39   13 - 13   15 - 26   28 - 36   40 - 109   113 - 157   168 - 185   188 - 205   208 - 259   267 - 268   302 - 304   308 - 310
2 137 0.51   12 - 12   14 - 14   27 - 27   37 - 39   110 - 112   158 - 167   186 - 187   206 - 207   260 - 266   269 - 301   305 - 307   311 - 396

Sequence


           _12____________26________36_39___________________________________________________________________109____________________ 
 2nmp(B) : GFLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 
         :                                                                                                                          
 2nmp(C) : GFLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ--gFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 
           _12____________26________36_39___________________________________________________________________109____________________ 

           _________________________157_______167_______________185_________________205____________________________________________ 
 2nmp(B) : LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 
         :                                                                                                                          
 2nmp(C) : LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 
           _________________________157_______167_______________185_________________205____________________________________________ 

           _______259____266________________________________301___307______________________________________________________________ 
 2nmp(B) : IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAI---------------i 
         :                                                                                                                          
 2nmp(C) : IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGI 
           _______259____266________________________________301___307______________________________________________________________ 

           ________________________________                                                                                         
 2nmp(B) : SDTLIRLSVGLEDEEDLLEDLDQALKAAHPP*                                                                                         
         :                                                                                                                          
 2nmp(C) : SDTLIRLSVGLEDEEDLLEDLDQALKAAHPPS                                                                                         
           ________________________________                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.0
Translation
(A)
0.1
Closure
(%)
94.5
Bending Residues
( green )
  12 - 15
  26 - 28
  36 - 37
  39 - 40
  109 - 110
  112 - 113
  157 - 158
  167 - 168
  185 - 188
  205 - 208
  259 - 260
  266 - 269
  301 - 302
  304 - 305
  307 - 308
  310 - 311
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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