DNA Polymerase III Polc-Type

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Polymerase III Polc-Type
  Conformer 1
(PDB)
2p1j (B)
  Conformer 2
(PDB)
2p1j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 138 0.89   359 - 496
2 20 1.44   499 - 518

Sequence


           ________________________________________________________________________________________________________________________ 
 2p1j(B) : TFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKS 
         :                                                                                                                          
 2p1j(A) : TFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKS 
           ________________________________________________________________________________________________________________________ 

           ______________493__________________________________                                                                      
 2p1j(B) : LLKLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKEGHHH                                                                      
         :                                                                                                                          
 2p1j(A) : LLKLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEMM*******                                                                      
           ______________493__________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.3
Translation
(A)
-6.6
Closure
(%)
99.5
Bending Residues
( green )
  493 - 502
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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