Heat Shock Locus U

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Heat Shock Locus U
  Conformer 1
(PDB)
1do2 (B)
  Conformer 2
(PDB)
1do0 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 320 1.88   4 - 114   117 - 117   233 - 233   235 - 441
2 82 3.99   115 - 116   118 - 232   234 - 234

Sequence


           ______________________________________________________________________________________________________________114_______ 
 1do2(B) : SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRY 
         :                                                                                                                          
 1do0(C) : SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRY 
           ______________________________________________________________________________________________________________114_______ 

           _________________________________________________________________________232____________________________________________ 
 1do2(B) : RAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEkQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG 
         :                                                                                                                          
 1do0(C) : RAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID-aRKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG 
           _________________________________________________________________________232____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1do2(B) : VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLH 
         :                                                                                                                          
 1do0(C) : VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLH 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________                                                                          
 1do2(B) : TVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL                                                                          
         :                                                                                                                          
 1do0(C) : TVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL                                                                          
           _______________________________________________                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.8
Translation
(A)
0.7
Closure
(%)
56.4
Bending Residues
( green )
  114 - 118
  232 - 235
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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