60-Kda Ss-A/ro Ribonucleoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 60-Kda Ss-A/ro Ribonucleoprotein
  Conformer 1
(PDB)
1yvr (A)
  Conformer 2
(PDB)
1yvp (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 390 0.58   7 - 154   279 - 281   284 - 535
2 126 1.36   155 - 278   282 - 283

Sequence


           ________________________________________________________________________________________________________________________ 
 1yvr(A) : *MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEGRAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPT 
         :                                                                                                                          
 1yvp(B) : TMDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEGRAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPT 
           ________________________________________________________________________________________________________________________ 

           ________134_____________________________________________________________________________________________________________ 
 1yvr(A) : HLFTFIQFKKDL--------wGRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELE 
         :                                                                                                                          
 1yvp(B) : HLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELE 
           ________134_____________________________________________________________________________________________________________ 

           ________________________________278_____________________________________________________________________________________ 
 1yvr(A) : IIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHILVALETYKKGH---lRWIPDTSIVEALDNAFYKSFKLVE 
         :                                                                                                                          
 1yvp(B) : IIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHILVALETYKKGHGNkLRWIPDTSIVEALDNAFYKSFKLVE 
           ________________________________278_____________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1yvr(A) : PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQ 
         :                                                                                                                          
 1yvp(B) : PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQ 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________                                                                     
 1yvr(A) : YREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNFTLDL                                                                     
         :                                                                                                                          
 1yvp(B) : YREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNFTLDL                                                                     
           ____________________________________________________                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.3
Translation
(A)
1.1
Closure
(%)
93.9
Bending Residues
( green )
  134 - 155
  278 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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