L-Allo-Threonine Aldolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Allo-Threonine Aldolase
  Conformer 1
(PDB)
2fm1 (D)
  Conformer 2
(PDB)
1lw5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 236 0.32   7 - 254
2 88 0.32   4 - 6   255 - 340

Sequence


           _______6________________________________________________________________________________________________________________ 
 2fm1(D) : HHMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKA 
         :                                                                                                                          
 1lw5(A) : ***IDLRSDTVTKPTEE-rKA-aQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGT-gNQVSI-aHTQRGDEVILEADSHIFWYEVGA-aVLSGV-pHPVPGKNGA-dPDDVRKA 
           _______6________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fm1(D) : IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSgLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAA 
         :                                                                                                                          
 1lw5(A) : IRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV-fCLSgLCAPVGSVVVGDRDFIERARKARK-lGGG-rQAGVLAAA 
           ________________________________________________________________________________________________________________________ 

           ____________254_________________________________________________________________________________________                 
 2fm1(D) : GIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                 
         :                                                                                                                          
 1lw5(A) : GIIALTK-vDRLKEDHENARFLALKLKEIGYSVNPEDVKTN-vILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                 
           ____________254_________________________________________________________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.0
Translation
(A)
-0.1
Closure
(%)
86.8
Bending Residues
( green )
  6 - 7
  254 - 255
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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