3-Octaprenyl-4-Hydroxybenzoate Carboxy-Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Octaprenyl-4-Hydroxybenzoate Carboxy-Lyase
  Conformer 1
(PDB)
2idb (A)
  Conformer 2
(PDB)
2idb (C)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 391 0.53   10 - 223   256 - 468
2 27 0.75   224 - 255

Sequence


           ________________________________________________________________________________________________________________________ 
 2idb(A) : *YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSpVLCNLFGTPKRVAggQEDVSALREVGKLLAFLKEPEPPKGFRDLpTKRLRGAPCQQKIVSGDDV 
         :                                                                                                                          
 2idb(C) : KYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSpVLCNLFGTPKRVAggQEDVSALREVGKLLAFLK-------------kRLRGAPCQQKIVSGDDV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________223_____________________________255_______ 
 2idb(A) : DLNRIPItCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIrWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISND 
         :                                                                                                                          
 2idb(C) : DLNRIPItCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIrWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTP-----sEYAFAGLLRGTKTEVVKCISND 
           ______________________________________________________________________________223_____________________________255_______ 

           ________________________________________________________________________________________________________________________ 
 2idb(A) : LEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVg 
         :                                                                                                                          
 2idb(C) : LEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVg 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________                 
 2idb(A) : VWSFLRQFyTKFVIVCDDDVNARDWNDVIWAITTRdPARDTVLVENTPIDYLDFASPVSGLGSKgLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF                 
         :                                                                                                                          
 2idb(C) : VWSFLRQFyTKFVIVCDDDVNARDWNDVIWAITTRdPARDTVLVENTPIDYLDFASPVSGLGSKgLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF                 
           ________________________________________________________________________________________________________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.1
Closure
(%)
94.6
Bending Residues
( green )
  223 - 225
  255 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download