Acetylglutamate Kinase-Like Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylglutamate Kinase-Like Protein
  Conformer 1
(PDB)
2rd5 (A)
  Conformer 2
(PDB)
2rd5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 209 0.81   19 - 41   48 - 211   263 - 271   280 - 292
2 68 1.1   42 - 47   212 - 262   272 - 279   293 - 295

Sequence


           _________________________41_____________________________________________________________________________________________ 
 2rd5(A) : **DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGL 
         :                                                                                                                          
 2rd5(B) : SPDYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGL 
           _________________________41_____________________________________________________________________________________________ 

           __________________________________________________________________________211___________________________________________ 
 2rd5(A) : SGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIP 
         :                                                                                                                          
 2rd5(B) : SGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIP 
           __________________________________________________________________________211___________________________________________ 

           _____262______271_____279_________291______                                                                              
 2rd5(A) : KVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG                                                                              
         :                                                                                                                          
 2rd5(B) : KVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG                                                                              
           _____262______271_____279_________291______                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
-0.3
Closure
(%)
99.9
Bending Residues
( green )
  41 - 58
  211 - 212
  262 - 263
  271 - 272
  279 - 280
  291 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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