Endothiapepsin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endothiapepsin
  Conformer 1
(PDB)
4ape  
  Conformer 2
(PDB)
1gvu (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 210 0.55   3 - 148   150 - 184   212 - 225   271 - 271   299 - 313
2 108 0.58   149 - 149   184A - 211   226 - 270   272 - 298   314 - 321

Sequence


           ________________________________________________________________________________________________________________________ 
 4ape    : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
         :                                                                                                                          
 1gvu(A) : STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV--qTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDS 
           ________________________________________________________________________________________________________________________ 

           _______________________________148_______________________________184________________________211_________223_____________ 
 4ape    : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
         :                                                                                                                          
 1gvu(A) : TIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS 
           _______________________________154_______________________________188________________________215_________227_____________ 

           ________________________________270_______________________298____________313______________                               
 4ape    : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
         :                                                                                                                          
 1gvu(A) : GAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK                               
           ________________________________275_______________________301____________316______________                               

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.8
Translation
(A)
-0.1
Closure
(%)
9.3
Bending Residues
( green )
  148 - 150
  184 - 184A
  211 - 212
  223 - 226
  270 - 275
  298 - 299
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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