Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1nwk (A)
  Conformer 2
(PDB)
1nmd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 290 0.77   8 - 33   81 - 110   124 - 357
2 59 0.73   34 - 80   111 - 123   358 - 369

Sequence


           ____________________________33___________________________________80__________________________109___________123__________ 
 1nwk(A) : **TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--sYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMY 
         :                                                                                                                          
 1nmd(A) : DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHdSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 
           ____________________________33___________________________________80__________________________109___________123__________ 

           ________________________________________________________________________________________________________________________ 
 1nwk(A) : VAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNE 
         :                                                                                                                          
 1nmd(A) : VAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSYELPDGQVITIGNE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________357________________ 
 1nwk(A) : RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH** 
         :                                                                                                                          
 1nmd(A) : RFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 
           _____________________________________________________________________________________________________357________________ 

           __                                                                                                                       
 1nwk(A) : **                                                                                                                       
         :                                                                                                                          
 1nmd(A) : CF                                                                                                                       
           __                                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.6
Translation
(A)
-0.1
Closure
(%)
18.8
Bending Residues
( green )
  33 - 34
  80 - 81
  109 - 111
  123 - 124
  357 - 358
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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