Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
1qz6 (A)
  Conformer 2
(PDB)
1nwk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 189 0.73   147 - 165   170 - 339
2 160 0.81   8 - 146   166 - 169   340 - 369

Sequence


           ________________________________________________________________________________________________________________________ 
 1qz6(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRdSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAI 
         :                                                                                                                          
 1nwk(A) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-sYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAI 
           ________________________________________________________________________________________________________________________ 

           _______146________________165_169_______________________________________________________________________________________ 
 1qz6(A) : QAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFR 
         :                                                                                                                          
 1nwk(A) : QAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFR 
           _______146________________165_169_______________________________________________________________________________________ 

           ________________________________________________________________________________339____________________________________  
 1qz6(A) : CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  
         :                                                                                                                          
 1nwk(A) : CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH****  
           ________________________________________________________________________________339____________________________________  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
-0.1
Closure
(%)
16.2
Bending Residues
( green )
  146 - 147
  165 - 166
  169 - 170
  339 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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