Actin Alpha 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin Alpha 1
  Conformer 1
(PDB)
2hf3 (A)
  Conformer 2
(PDB)
1hlu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 215 0.94   70 - 75   108 - 111   113 - 114   138 - 139   141 - 335   357 - 357   368 - 373
2 144 0.92   4 - 69   76 - 107   112 - 112   115 - 137   140 - 140   336 - 356   358 - 367

Sequence


           __________________________________________________________________69____75_____________________________107_111__________ 
 2hf3(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR----------kDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 1hlu(A) : DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
           __________________________________________________________________69____75_____________________________107_111__________ 

           _____________137________________________________________________________________________________________________________ 
 2hf3(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
         :                                                                                                                          
 1hlu(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
           _____________137________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________335__________________356_____ 
 2hf3(A) : LKDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
         :                                                                                                                          
 1hlu(A) : LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
           ___________________________________________________________________________________________335__________________356_____ 

           ___367________                                                                                                           
 2hf3(A) : YDESGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 1hlu(A) : YDESGPSIVHRKCF                                                                                                           
           ___367________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.1
Closure
(%)
88.5
Bending Residues
( green )
  69 - 72
  75 - 76
  107 - 108
  111 - 115
  137 - 141
  335 - 336
  356 - 358
  367 - 368
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download