Acylamino-Acid-Releasing Enzyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acylamino-Acid-Releasing Enzyme
  Conformer 1
(PDB)
3o4j (C)
  Conformer 2
(PDB)
3o4j (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 312 1.4   20 - 321   377 - 377   558 - 566
2 260 0.99   8 - 19   322 - 376   378 - 557   567 - 579

Sequence


           __________15____________________________________________________________________________________________________________ 
 3o4j(C) : IMPVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEA 
         :                                                                                                                          
 3o4j(D) : **PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEA 
           __________15____________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3o4j(C) : VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 
         :                                                                                                                          
 3o4j(D) : VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________319____________________________________________ 
 3o4j(C) : RPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTV 
         :                                                                                                                          
 3o4j(D) : RPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLEGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTPGPTV 
           _________________________________________________________________________319____________________________________________ 

           ________374_____________________________________________________________________________________________________________ 
 3o4j(C) : VLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA 
         :                                                                                                                          
 3o4j(D) : VLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA 
           ________374_____________________________________________________________________________________________________________ 

           ________________________________________________________________550________________________________                      
 3o4j(C) : AFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRERR                      
         :                                                                                                                          
 3o4j(D) : AFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRER*                      
           ________________________________________________________________550________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.6
Translation
(A)
-0.2
Closure
(%)
87.6
Bending Residues
( green )
  15 - 23
  319 - 323
  374 - 378
  550 - 567
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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