Anthranilate Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anthranilate Phosphoribosyltransferase
  Conformer 1
(PDB)
2gvq (A)
  Conformer 2
(PDB)
2gvq (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 215 0.72   67 - 152   181 - 199   216 - 231   234 - 236   243 - 298   304 - 341
2 121 0.48   3 - 66   153 - 180   200 - 215   232 - 233   237 - 242   299 - 303

Sequence


           ________________________________________________________________66______________________________________________________ 
 2gvq(A) : MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTg---LGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSAD 
         :                                                                                                                          
 2gvq(D) : MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSAD 
           ________________________________________________________________66______________________________________________________ 

           __________________________149____________________________180________________199_____________215_____________231__236___2 
 2gvq(A) : VLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRG 
         :                                                                                                                          
 2gvq(D) : VLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRG 
           __________________________149____________________________180________________199_____________215_____________231__236___2 

           42_____________________________________________________298_______________________________________________                
 2gvq(A) : IEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKS**                
         :                                                                                                                          
 2gvq(D) : IEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKSSG                
           42_____________________________________________________298_______________________________________________                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.9
Translation
(A)
0.1
Closure
(%)
99.6
Bending Residues
( green )
  66 - 67
  149 - 153
  180 - 181
  199 - 200
  215 - 216
  231 - 234
  236 - 237
  242 - 243
  298 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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