Apolipoprotein A-II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Apolipoprotein A-II
  Conformer 1
(PDB)
1l6l (D)
  Conformer 2
(PDB)
1l6l (K)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 37 2.52   39 - 75
2 32 2.83   5 - 38

Sequence


           _____________________________32___________________________________________                                               
 1l6l(D) : AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQaKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ                                               
         :                                                                                                                          
 1l6l(K) : AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAkSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ                                               
           _____________________________32___________________________________________                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
114.9
Translation
(A)
7.9
Closure
(%)
80.0
Bending Residues
( green )
  32 - 39
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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