Atp-Dependent RNA Helicase Eif4a

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Eif4a
  Conformer 1
(PDB)
2vso (A)
  Conformer 2
(PDB)
2j0u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 2.68   24 - 224
2 154 1.2   225 - 389

Sequence


           ________________________________________________________________________________________________________________________ 
 2vso(A) : QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIgLRDA- 
         :                                                                                                                          
 2j0u(A) : **********PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________224__________________________ 
 2vso(A) : ----------QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 
         :                                                                                                                          
 2j0u(A) : EDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 
           ___________________________________________________________________________________________241__________________________ 

           ________________________________________________________________________________________________________________________ 
 2vso(A) : LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR------kGVAINFVTNEDVG 
         :                                                                                                                          
 2j0u(A) : LCDLYD---iTQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR--dVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIR 
           ________________________________________________________________________________________________________________________ 

           _______________________                                                                                                  
 2vso(A) : AMRELEKFYSTQIEELPSDIATL                                                                                                  
         :                                                                                                                          
 2j0u(A) : VLRDIEQYYSTQIDEMPMNVA**                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
179.6
Translation
(A)
2.9
Closure
(%)
70.9
Bending Residues
( green )
  224 - 227
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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