Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (A)
  Conformer 2
(PDB)
3hws (D)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 210 1.51   68 - 318
2 90 0.28   319 - 408

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(A) : *ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
         :                                                                                                                          
 3hws(D) : SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________318___________ 
 3hws(A) : YIDQIDKISRKSDNPrDVSGEGVQQALLKLIEGTfL---QVDTSKILFICGGAFAGLDKVISHRVETGSdKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEP 
         :                                                                                                                          
 3hws(D) : YIDQIDKISR-------vSGEGVQQALLKLIEGTVAAVPqVDTSKILFICGGAFAGLDKVISHRVETG---aSEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEP 
           __________________________________________________________________________________________________________318___________ 

           ______________________________________________________________________________________                                   
 3hws(A) : KNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY**                                   
         :                                                                                                                          
 3hws(D) : KNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYGK                                   
           ______________________________________________________________________________________                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
-1.4
Closure
(%)
88.1
Bending Residues
( green )
  318 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download