Chimeric 48G7 Fab

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chimeric 48G7 Fab
  Conformer 1
(PDB)
1kel (L)
  Conformer 2
(PDB)
1l7i (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 0.84   12 - 12   110 - 215
2 101 1.96   3 - 11   13 - 109

Sequence


           _________11_______________________________________________________________________________________________109___________ 
 1kel(L) : DVLMTQTPLSLPVSLGDQASISCRFSQSIVHSNGNTYLEWYLQKSGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTV 
         :                                                                                                                          
 1l7i(L) : DIQMTQSPSSLSASVGDRVTITCKASQDV--SIG---VAWYQQKPGKAPKLLIYSASYRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYIYPYTFGQGTKVEIKRTVAAPSV 
           _________11_______________________________________________________________________________________________104___________ 

           ___________________________________________________________________________________________________                      
 1kel(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN**                      
         :                                                                                                                          
 1l7i(L) : FIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                      
           ___________________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
36.8
Translation
(A)
-1.2
Closure
(%)
74.1
Bending Residues
( green )
  11 - 13
  109 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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