Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1y6w (A)
  Conformer 2
(PDB)
1wrz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 32 1.43   5 - 27   60 - 68
2 30 1.76   28 - 59
3 61 0.9   81 - 143

Sequence


           ________________________27___________________________56__________68_____________________________________________________ 
 1y6w(A) : *QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV-rSLGCNPTEAELQD-iNEVDADGNGTINFPEFLTa---RCkDTDSEEEIREAFRVFDKDGNGYISAAELRHV-tNLGEKLTDEEV 
         :                                                                                                                          
 1wrz(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           ________________________27___________________________56__________68_____________________________________________________ 

           ___________________________                                                                                              
 1y6w(A) : DE-iREADIDGDGQVNYEEFVQtA***                                                                                              
         :                                                                                                                          
 1wrz(A) : DEMIREADIDGDGQVNYEEFVQMMTAK                                                                                              
           ___________________________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
56.1
Translation
(A)
3.5
Closure
(%)
57.5
Bending Residues
( green )
  27 - 28
  56 - 61
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
150.3
Translation
(A)
-13.3
Closure
(%)
97.0
Bending Residues
( green )
  68 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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