Camp-Dependent Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase
  Conformer 1
(PDB) 		1bx6  
  Conformer 2
(PDB) 		1fot (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.9   99 - 102   123 - 313
2 76 1.04   43 - 98   103 - 122

Sequence


           _____________________________________________________________________________________98_102_________________122_________ 
 1bx6    : QESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSH 
         :                                                                                                                          
 1fot(A) : **************************YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL 
           ____________________________________________________________________________________142_146_________________166_________ 

           ________________________________________________________________________________________________________________________ 
 1bx6    : LRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWlCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 
         :                                                                                                                          
 1fot(A) : LRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYlCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILN 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________                        
 1bx6    : GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRViNEKCGKEFTEF                        
         :                                                                                                                          
 1fot(A) : AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIdINYGVQGEDPYADLFRDF************                        
           _________________________________________________________________________________________________                        

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.6
Translation
(A) 		0.0
Closure
(%) 		51.7
Bending Residues
( green ) 		  98 - 99
  102 - 103
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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