Amp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amp-Dependent Protein Kinase, Alpha-Catalytic Subunit
  Conformer 1
(PDB)
1cmk (E)
  Conformer 2
(PDB)
1cdk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 231 0.83   10 - 30   93 - 105   122 - 184   187 - 320
2 108 1.58   31 - 92   106 - 121   185 - 186   321 - 348

Sequence


           ____________________________30____________________________________________________________92__________105_____________12 
 1cmk(E) : GNAAAAKKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVM 
         :                                                                                                                          
 1cdk(A) : *******KGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVM 
           ____________________________30____________________________________________________________92__________105_____________12 

           1____________________________________________________________184________________________________________________________ 
 1cmk(E) : EYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA 
         :                                                                                                                          
 1cdk(A) : EYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA 
           1____________________________________________________________184________________________________________________________ 

           ________________________________________________________________________315___________________________________           
 1cmk(E) : DQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF           
         :                                                                                                                          
 1cdk(A) : DQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF           
           ________________________________________________________________________315___________________________________           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.3
Translation
(A)
1.1
Closure
(%)
98.8
Bending Residues
( green )
  30 - 31
  92 - 93
  105 - 106
  121 - 122
  184 - 187
  315 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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